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Database description



1. Introduction
   1.1. DNA methylation
   1.2. Importance of this DB
   1.3. Thoroughbred horse
   1.4. Jeju horse


2. Data description
   2.1. Horse sample
   2.2. Get methylation state


3. Application
   3.1. Methylated regions
   3.2. DMR in two breeds
   3.3. Gene index


4. Future direction
   4.1. Prospects
   4.2. Data update


5. Conclusion


- Reference paper (pdf)
1. Search by Chromosome & Regions (Example)

  1.1. Select breeds*: "Thoroughbred" horse "Jeju" horse

  1.2. Select tissue:
 
  1.3. Select chromosome*    
   
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  1.4. Set genomic region from * to * ( All chr region)
    with Threshold: *

  1.5. Set Gene name and Transposable Element (TE) family
    Gene name:
(Gene index)
    TE family:
 

 
   
Database summary

1. Peak distribution
   1.1. Thoroughbred horse
      1.1.1. Cerebrum (80K)
      1.1.2. Lung (76K)
      1.1.3. Heart (97K)
      1.1.4. SK-muscle (112K)
   1.2. Jeju horse
      1.2.1. Cerebrum (61K)
      1.2.2. Lung (88K)
      1.2.3. Heart (97K)
      1.2.4. SK-muscle (112K)

2. Ratio of Methylated CGIs
   2.1. Thoroughbred horse
      2.1.1. Cerebrum (10.1%)
      2.1.2. Lung (12.8%)
      2.1.3. Heart (7.7%)
      2.1.4. SK-muscle (12.3%)
   2.2. Jeju horse
      2.2.1. Cerebrum (7.8%)
      2.2.2. Lung (12.8%)
      2.2.3. Heart (10.3%)
      2.2.4. SK-muscle (11.3%)
2. Search by comparing two horse breeds ("Thoroughbred", "Jeju") (Example)

  2.1. Select breeds*: "Thoroughbred" horse "Jeju" horse

  2.2. Select tissue:

  2.3. Methylation state: Hypermethylated Hypomethylated

  2.4. Select chromosome*
   
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  2.5. Set Differences: * with Threshold: *

 

                         
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Copyright 2014. Genomic Information Lab., Dept. of Biological sciences, Pusan National University. All rights reserved.
2, Busandaehak-ro 63beon-gil, Geumjeong-gu, Busan 609-735, S. Korea.
Last modified: 29 July 2014. For any comments, suggestions and/or question, send e-mail to vitastar@pusan.ac.kr